Development of a Standardised AMR Laboratory for Resource-Limited Settings

Challenges addressed by the project

The spread of antimicrobial resistant (AMR) pathogens will severely affect sub-Saharan Africa in the coming years, with an estimated 4.2 million AMR-associated deaths expected in 2050. While strengthening molecular biology diagnostics plays an important role in preparing for and managing viral epidemics, it will be of limited use during the current AMR epidemic. This is due to molecular methods still being suboptimal and too expensive for routine AMR monitoring and detection of emerging bacterial resistance. Rather, classical bacteriology laboratories capable of carrying out bacterial cultures and antibiotic susceptibility testing are urgently needed outside large teaching and university clinics in semi-urban or rural sub-Saharan Africa.


  • Development of a universally applicable construction plan for bacteriology laboratories used for the diagnosis of AMR pathogens
  • Construction of bacteriology laboratories for AMR in Assin Foso and Agroyesum, Ghana and Koro, Mali
  • Training of laboratory staff and evaluation of AMR surveillance activities
  • Establishment of biobanks for the safe storage of biological samples and isolates and Laboratory Information and Management Systems (LIMS)

Overview of activities

The project aims at developing the prototype of functional and cost-effective diagnostic bacteriology laboratories capable of processing microbiological samples including blood, urine, stool etc. as well as antibiotic susceptibility tests according to the guidelines of the WHO Global Antimicrobial Resistance Surveillance System (GLASS). The laboratories will be fully integrated into the national AMR surveillance activities and are designed as self-sufficient structures that operate without external power and water supply in difficult-to-access regions. The first prototype laboratory in Assin Fosu was successfully completed in 2020. AMR surveillance activities have now been introduced to the laboratory, and patient samples are currently being processed in the laboratory integrated into the hospital routine. Capacity building of laboratory personnel and training activities is continuously conducted. Training for two technical laboratory assistants as proposed in the previous report was successfully completed at the Kumasi Centre for Collaborative Research in Tropical Medicine (KCCR). The training focussed on the identification and sensitivity testing of bacterial pathogens from different sample types. 

We have also evaluated ongoing activities and are currently working on the feedback given to us by the local members of staff. This for example has resulted in the introduction of other sample types such as the processing of cerebrospinal fluid and wound samples. We further conducted a Global Point Prevalence Survey (GPPS) to measure the antibiotic consumption of hospital inpatients. We aim to track changes in the perceptions of hospital personnel that result in more targeted prescription patterns being informed by the results of the antibiotic susceptibility testing.

The second laboratory in Mali has now been fully equipped. Training activities as well as the establishment of AMR surveillance will start within the next months. Also, we are currently working on a Laboratory Information and Management System (LIMS) to be introduced in the local laboratories in Ghana. A twin laboratory to the laboratory in Assin Fosu is under construction in the rural Agroyesum (see pictures below) and equipment has been purchased by the KCCR and BNITM.


Partner country Ghana
Institutions Kumasi Centre for Collaborative Research in Tropical Medicines (KCCR)
  The Ghana Health Service (GHS)
Partner country Mali
Institutions Centre d’Infectiologie Charles Mérieux (CICM)
  African Association for Research and Control of Antimicrobial Resistance (AAAMR)
Partner country Tanzania
Institutions National Institutes for Medical Research (NIMR), Tanga Centre

For further details please visit the Stand-AMR website provided by the GHP Programme.


Funding Period 2019-2021
Funding Body GHP Programme supported by the German Federal Ministry of Health (BMG)

Department of Infectious Disease Epidemiology

Porträtfoto von Prof. Dr. Jürgen May, eines erfahrenen freundlich blickenden Forschers
Head of Dept Infectious Diseases Epidemiology

Prof. Dr. Jürgen May

Telefon: +49 40 285380-402


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