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Characterization of Salmonella enterica from invasive bloodstream infections and water sources in rural Ghana
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  • BMC Infect Dis. 2018 Jan 19;18(1):47. doi: 10.1186/s12879-018-2957-4

Ebola Virus Persistence in Breast Milk After No Reported Illness: A Likely Source of Virus Transmission From Mother to Child
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  • Clin Infect Dis. 2017 Feb 15;64(4):513-516. doi: 10.1093/cid/ciw793

Hungary as a source of West Nile virus diversity and spread in Europe: insights from the 2024 transmission season
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  • Eurosurveillance, Volume 31, Issue 16

consistent with differences in transmission intensity between the two regions. upsML is fast, open-source, and can classify var genes from 20 genomes in under a second. Code and models: https://github.c