Alumni AG Otto
In construction
PhD Students
Jia Li, University of Edinburgh, Prakash Ramachandran, MRC Precision Medicine, 2026
No title?
Caglar Cil, University of Glasgow, Miguel Pineda, MRC Precision Medicine, 2025
No title?
Jack Frey, University of Glasgow, Mariola Kurowska-Stolarska, MRC Precision Medicine, 2025
Katy Flemming, University of Bristol, Borko Amulic (I had a minor role here)
Olympia Hardy, University of Glasgow, Mariola Kurowska-Stolarska (co), MRC Precision Medicine, 2025
Ross Laidlaw, University of Glasgow, Richard McCulloch (co), MRC Precision Medicine, 2024
Lauren Galloway, University of Glasgow, Matt Marti, MRC Precision Medicine, 2023
Eva Crespo Garcia, University of Glasgow, Tomasz Guzik, 2022
Alexandra Pancheva, University of Glasgow, Simon Rogers (co), MRC Precision Medicine, 2022
Lucy MacDonald, University of Glasgow, Mariola Kurowska-Stolarska, MRC Precision Medicine, 2022
Collins Misita Morang’a, University of Ghana, Gordon Awandare, Delta Student, 2021
Gavin Rutledge, Wellcome Sanger Institute/University of Cambrigde, Matt Berriman & Dominic Kwiatkowski, 2014
Master Students
Can I list them all? If I have forgotten you, please drop me a line!!!
Elcid Aaron Pangilinan, 2024, upsAI: A high-accuracy machine learning classifier for predicting Plasmodium falciparum var gene upstream groups. Paper just about to get published…
Boyi Xiao, 2024, Prediction of Host-Parasite Interactions
Mingfeng Zhang, 2023, Evaluating Diverse Analysis Methods by Analysing Gene Expression Changes in Parasites Induced by Lysophosphatidylcholine Depletion
Peiyi Wu, 2023, Trajectory Inference of P. falciparum Development: Study under Two Conditions and Comparison of Different TI Methods
Ziyu Shen & Arun Joseph, 2022, Detecting the existence of zoonotic pathogens in NGS data
Yiyi Cheng, 2021, Pooling single cells RNAseq data to create virtual cells: a novel method to discover genes differentially expressed.
Yiyi is currently PhD Student in my Lab (Glasgow). Her master project (now call CellDEEP) became part of her PhD is under review and can be viewed on BioRxiv.
Carol Clark, 2021, Generating an R Shiny Front End to Visualise Pseudotime Analysis - that project then lead into ParaCell - cellatlas, lead by Edward Agboraw, another Glasgow Bioinformatics Master student (ParaCell paper)
Ahmad Alsaeed, 2021, Exploring the signature of CD14 in the blood across different diseases at the single cell level using Seurat
Meng Du, 2020, Pseudotime Inference and RNA Velocity in Plasmodium berghei
Roan Zaied, 2020, Developed an R Shiny application to understand the effect of cell count on a scRNA-seq analysis pipeline
Yi Lu, 2020, Exploring the structure of the rif and stevor gene family in malaria
Ye Sun, 2020, Trajectories of B cell in RA
Lucy MacDonald, 2018, Optimizing unsupervised clustering of scRNAseq data to facilitate the identification of synovial tissue macrophage populations in remission of Rheumatoid Arthritis.
Lucy did then a PhD with Mariola and me, we many cool RA papers!
Gavin Mackenziem, 2019, Predicting var genes from fragement.
His master lead to the Varia paper, which is used to date by the malaria community!
