Overview

We build data-driven methods to decode host–pathogen interactions and pathogen evolution, integrating genome sequencing with single-cell, spatial omics, imaging data and clinical data. Our team develops robust, shareable pipelines, machine-learning models, and resources for the collaborators and the community. We collaborate widely, especially with partners in Africa, and are committed to open, reproducible science and training. Current projects span malaria and infectious diseases, linking microenvironments to immune responses and therapeutic opportunities.